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read(String, int) - Method in class services.gui.LogFileReader: Reads from the logs folder the given log file in reverse order and returns it as Akka Stream source.
readLogFile(Study, int) - Method in class general.common.StudyLogger
reassign_noOtherGroup_returnsFalse() - Method in class group.GroupAdministrationTest
reassign_success_movesMembershipAndChannel() - Method in class group.GroupAdministrationTest
reassignChannel_movesChannelAndTriggersJoinedLeft() - Method in class group.GroupDispatcherTest
refresh(Object) - Method in class daos.common.AbstractDao
refresh(ComponentResult) - Method in class daos.common.ComponentResultDao
refresh(GroupResult) - Method in class daos.common.GroupResultDao
refresh(StudyResult) - Method in class daos.common.StudyResultDao
refresh(User) - Method in class daos.common.UserDao
REGEX_ILLEGAL_IN_FILENAME - Static variable in class utils.common.IOUtils: Regular expression of illegal characters or strings in file or directory names '/', '\n', '\r', * '//', '\t', '\0', '\f', '`', '?', '*', '\\', '<', '>', '|', '\"', ':', '~', '!', '§', '$', '%', '&'
REGEX_ILLEGAL_IN_PATH - Static variable in class utils.common.IOUtils
register_addsEntry_andReturnsPrevious_onOverwrite() - Method in class group.GroupChannelRegistryTest
registerAndLookupByIdAndChannel() - Method in class batch.BatchChannelRegistryTest
registerChannel_sendsOpenedToSelfAndOthers() - Method in class group.GroupDispatcherTest
registerOnExistingIdReturnsPreviousAndReplaces() - Method in class batch.BatchChannelRegistryTest
registerUser(NewUserProperties) - Method in class services.gui.UserService
registerUser_success() - Method in class services.gui.UserServiceTest
registerUser_userExists_throwsAuthException() - Method in class services.gui.UserServiceTest
RELOADABLE - Static variable in class models.gui.ComponentProperties
RELOADED - models.common.ComponentResult.ComponentState
remove(Long) - Method in class auth.gui.ApiTokens
remove(Object) - Method in class daos.common.AbstractDao
remove(ApiToken) - Method in class daos.common.ApiTokenDao
remove(Batch) - Method in class daos.common.BatchDao
remove(Batch, User) - Method in class services.gui.BatchService: Removes batch, all it's StudyResults, ComponentResults, GroupResults and Workers (if they don't belong to another batch) and persists the changes to the database.
remove(Component) - Method in class daos.common.ComponentDao
remove(ComponentResult) - Method in class daos.common.ComponentResultDao
remove(Component, User) - Method in class services.gui.ComponentService: Remove Component: Remove it from the given study, remove all its ComponentResults, and remove the component itself.
remove(GroupResult) - Method in class daos.common.GroupResultDao
remove(LoginAttempt) - Method in class daos.common.LoginAttemptDao
remove(Study) - Method in class daos.common.StudyDao
remove(StudyLink) - Method in class daos.common.StudyLinkDao
remove(StudyResult) - Method in class daos.common.StudyResultDao
remove(User) - Method in class daos.common.UserDao
remove(Worker) - Method in class daos.common.worker.WorkerDao
remove(Http.Request) - Method in class controllers.gui.ComponentResults: POST request that removes all ComponentResults specified in the parameter.
remove(Http.Request) - Method in class controllers.gui.StudyResults: POST request that removes all StudyResults specified in the parameter.
remove(Http.Request) - Method in class controllers.gui.Users: POST request to delete a user.
remove(Http.Request, Long, Long) - Method in class controllers.gui.Components: DELETE request to remove a component.
remove(IdCookieModel) - Method in class services.publix.idcookie.IdCookieCollection
remove_deletesResultsLinksGroups_andUpdatesOrRemovesWorkers() - Method in class services.gui.BatchServiceTest
remove_notFoundWhenForeignUser() - Method in class auth.gui.ApiTokensTest
remove_notFoundWhenMissing() - Method in class auth.gui.ApiTokensTest
remove_okWhenOwned() - Method in class auth.gui.ApiTokensTest
remove_shouldRemoveFromStudy() - Method in class services.gui.ComponentServiceIntegrationTest
remove_shouldUpdateStudy_removeResults_andRemoveComponent() - Method in class services.gui.ComponentServiceTest
removeActiveMember(StudyResult) - Method in class models.common.GroupResult
removeAllByBatch(Batch) - Method in class daos.common.StudyLinkDao
removeAllComponentResults_shouldDetachFromStudyResult_thenRemove_andLog() - Method in class services.gui.ResultRemoverTest
removeAllLogs() - Method in class testutils.JatosTest
removeAllMemberUsers(Long) - Method in class controllers.gui.Studies: DELETE request that removes all member users from a study
removeAllowedWorker(String) - Method in class models.common.legacy.StudyV2
removeAllowedWorkerType(String) - Method in class models.common.Batch
removeAllowedWorkerType(String) - Method in class models.gui.BatchProperties
removeAllResultUploads() - Method in class testutils.JatosTest
removeAllStudyAssets() - Method in class testutils.JatosTest
removeAllStudyLogs() - Method in class testutils.JatosTest
removeAllStudyResults_shouldRemoveEach_andLog() - Method in class services.gui.ResultRemoverTest
removeAllUserMembers(Study) - Method in class services.gui.StudyService: Removes all member users from the given study except the signed-in user.
removeAllUserMembers_keepsSignedInUser_removesOthers_andPersists() - Method in class services.gui.StudyServiceTest
removeAllUsers(List<User>) - Method in class models.common.Study
removeAllWorkers(List<Worker>) - Method in class models.common.Batch
removeBatch(Long, Long) - Method in class controllers.gui.StudyLinks: DELETE request to remove a Batch
removeBatch(Batch) - Method in class models.common.Study: Removes a batch from this study and the study from the batch.
removeBatch(Batch) - Method in class models.common.workers.Worker
removeByUsername(String) - Method in class daos.common.LoginAttemptDao
removeComponent(Component) - Method in class models.common.legacy.StudyV2
removeComponent(Component) - Method in class models.common.Study
removeComponentResult(ComponentResult) - Method in class models.common.StudyResult
removeComponentResults(List<Long>, User, boolean) - Method in class services.gui.ResultRemover: Retrieves all ComponentResults that correspond to the IDs in the given String, checks them and if yes, removes them.
removeComponentResults_shouldPropagateForbidden() - Method in class services.gui.ResultRemoverTest
removeComponentResults_shouldRemoveEach_andLog_andRemoveEmptyStudyResultWhenFlagTrue() - Method in class services.gui.ResultRemoverTest
removeComponentResults_whenNotEmpty_shouldNotRemoveStudyResult() - Method in class services.gui.ResultRemoverTest
removeComponentResults_wrongUser_forbidden() - Method in class services.gui.ResultRemoverIntegrationTest
removeHistoryMember(StudyResult) - Method in class models.common.GroupResult
removeMember(User) - Method in class models.common.legacy.StudyV2
removeMemberFromStudy(String, Long) - Method in class controllers.gui.Api
removeOldAttempts() - Method in class daos.common.LoginAttemptDao: Removes all LoginAttempts that are older than 1 minute
removeResults(Http.Request) - Method in class controllers.gui.Api: Removes results from the database (ComponentResults and StudyResults) and result files from the file system.
removeResultUploadsDir(Long) - Method in class utils.common.IOUtils
removeResultUploadsDir(Long, Long) - Method in class utils.common.IOUtils
removeRole(User.Role) - Method in class models.common.User
removesAccents() - Method in class models.common.UserTest
removeStudy(Study) - Method in class models.common.User
removeStudyAssetsDir(String) - Method in class utils.common.IOUtils: Remove study assets' directory if exists.
removeStudyInclAssets(Study, User) - Method in class services.gui.StudyService: Removes the given study, its components, component results, study results, group results and batches and persists the changes to the database.
removeStudyInclAssets_doesNotRemoveAssets_whenDirNameNull() - Method in class services.gui.StudyServiceTest
removeStudyInclAssets_removesBatches_users_study_assets_andLogs() - Method in class services.gui.StudyServiceTest
removeStudyResult(StudyResult) - Method in class models.common.workers.Worker
removeStudyResults(List<Long>, User) - Method in class services.gui.ResultRemover: Retrieves all StudyResults that correspond to the IDs in the given String, checks if the given user is allowed to remove them and if yes, removes them.
removeStudyResults_shouldRemoveAll_andLog() - Method in class services.gui.ResultRemoverTest
removeStudyResults_shouldRemoveStudyResultsAndTheirComponents() - Method in class services.gui.ResultRemoverIntegrationTest
removeStudyResults_wrongUser_forbidden() - Method in class services.gui.ResultRemoverIntegrationTest
removeUser(String) - Method in class services.gui.UserService
removeUser(String) - Method in class testutils.JatosTest
removeUser(User) - Method in class models.common.Study: Removes a user from this study and the study from the user.
removeUser(User) - Method in class services.gui.UserService: Removes the User belonging to the given username from the database.
removeUser_admin_forbidden() - Method in class services.gui.UserServiceTest
removeUser_multipleMembers_updatesStudy() - Method in class services.gui.UserServiceTest
removeUser_removesStudiesTokensAndUser() - Method in class services.gui.UserServiceTest
removeWorker(Worker) - Method in class models.common.Batch: Removes a worker from this batch and the batch from the worker.
renameHtmlFile(String, String, String) - Method in class utils.common.IOUtils: Renames a component's HTML file.
renameHtmlFilePath(Component, String, boolean) - Method in class services.gui.ComponentService: Renames the path to the HTML file in the file system and persists the component's property.
renameHtmlFilePath_currentFileNotExistNewFileExist() - Method in class services.gui.ComponentServiceIntegrationTest
renameHtmlFilePath_currentFileNotExistNewFileNotExist() - Method in class services.gui.ComponentServiceIntegrationTest
renameHtmlFilePath_newHtmlFilePathExists() - Method in class services.gui.ComponentServiceIntegrationTest
renameHtmlFilePath_successfulRename() - Method in class services.gui.ComponentServiceIntegrationTest
renameHtmlFilePath_whenCurrentExists_shouldOptionallyRename_andPersistNew() - Method in class services.gui.ComponentServiceTest
renameHtmlFilePath_whenCurrentMissing_shouldOnlyPersistNew_andNotRenameFile() - Method in class services.gui.ComponentServiceTest
renameHtmlFilePath_withEmptyNew_shouldPersistEmpty_andNotTouchFS() - Method in class services.gui.ComponentServiceTest
renameHtmlFilePath_withEmptyString() - Method in class services.gui.ComponentServiceIntegrationTest
renameHtmlFilePath_withSubFolder() - Method in class services.gui.ComponentServiceIntegrationTest
renameStudyAssetsDir(String, String) - Method in class utils.common.IOUtils: Renames a study assets dir.
renameStudyAssetsDir(Study, String) - Method in class services.gui.StudyService: Renames the directory in the file system and persists the study's property.
renameStudyAssetsDir_renamesInFs_updatesStudy_andPersists() - Method in class services.gui.StudyServiceTest
replaceData(Long, String) - Method in class daos.common.ComponentResultDao: Overwrite data in 'data' fields (data, dataShort, dataSize)
RequestScope - Class in general.common: Provides something similar to a request scope in Spring or Guice.
RequestScope() - Constructor for class general.common.RequestScope
RequestScopeMessaging - Class in general.gui: Passes on messages (info/warning/error/success) to the view.
RequestScopeMessaging() - Constructor for class general.gui.RequestScopeMessaging
ResultCreator - Class in services.publix: Service class that creates ComponentResults, StudyResults, and GroupResults
ResultCreatorTest - Class in services.publix: Unit tests for ResultCreator.
ResultCreatorTest() - Constructor for class services.publix.ResultCreatorTest
RESULTDATA_POSTED - models.common.ComponentResult.ComponentState
resultDataSize(Long) - Method in class controllers.gui.Admin: Returns the result data size of one study
resultFileSize(Long) - Method in class controllers.gui.Admin: Returns the size of all result files of one study
ResultRemover - Class in services.gui: Service class that removes ComponentResults or StudyResults.
ResultRemoverIntegrationTest - Class in services.gui: Tests for ResultRemover
ResultRemoverIntegrationTest() - Constructor for class services.gui.ResultRemoverIntegrationTest
ResultRemoverTest - Class in services.gui: Unit tests for ResultRemover
ResultRemoverTest() - Constructor for class services.gui.ResultRemoverTest
RESULTS - Static variable in class services.gui.BreadcrumbsService
RESULTS_COMPONENT_FILES - Static variable in class general.common.MessagesStrings
RESULTS_COMPONENT_MESSAGES - Static variable in class general.common.MessagesStrings
RESULTS_COMPONENT_RESULT_ID - Static variable in class general.common.MessagesStrings
RESULTS_COMPONENT_STATE - Static variable in class general.common.MessagesStrings
RESULTS_CONFIRMATION_CODE - Static variable in class general.common.MessagesStrings
RESULTS_CUSTOMIZATION - Static variable in class general.common.MessagesStrings
RESULTS_DATA - Static variable in class general.common.MessagesStrings
RESULTS_DATA_SELECTION - Static variable in class general.common.MessagesStrings
RESULTS_DESELECT_ALL - Static variable in class general.common.MessagesStrings
RESULTS_DURATION - Static variable in class general.common.MessagesStrings
RESULTS_DURATION_COMPONENT - Static variable in class general.common.MessagesStrings
RESULTS_END_TIME - Static variable in class general.common.MessagesStrings
RESULTS_END_TIME_COMPONENT - Static variable in class general.common.MessagesStrings
RESULTS_FILES - Static variable in class general.common.MessagesStrings
RESULTS_GROUP_ID - Static variable in class general.common.MessagesStrings
RESULTS_LAST_SEEN_TIME - Static variable in class general.common.MessagesStrings
RESULTS_SELECT_ALL - Static variable in class general.common.MessagesStrings
RESULTS_SELECT_FILTERED - Static variable in class general.common.MessagesStrings
RESULTS_SELECT_VISIBLE - Static variable in class general.common.MessagesStrings
RESULTS_START_TIME - Static variable in class general.common.MessagesStrings
RESULTS_START_TIME_COMPONENT - Static variable in class general.common.MessagesStrings
RESULTS_STUDY_ID - Static variable in class general.common.MessagesStrings
RESULTS_STUDY_MESSAGES - Static variable in class general.common.MessagesStrings
RESULTS_STUDY_STATE - Static variable in class general.common.MessagesStrings
RESULTS_WORKER_ID - Static variable in class general.common.MessagesStrings
RESULTS_WORKER_TYPE - Static variable in class general.common.MessagesStrings
ResultStreamer - Class in services.gui: Service class around ComponentResults and StudyResults.
ResultStreamer.ResultType - Enum in services.gui
retire(Study) - Method in class general.common.StudyLogger
retrieveComponent(Study, Long) - Method in class services.publix.PublixUtils: Returns the component with the given component ID that belongs to the given study.
retrieveComponent_inactive() - Method in class services.publix.PublixUtilsTest
retrieveComponent_notFound() - Method in class services.publix.PublixUtilsTest
retrieveComponent_success() - Method in class services.publix.PublixUtilsTest
retrieveComponent_wrongStudy() - Method in class services.publix.PublixUtilsTest
retrieveCurrentComponentResult(StudyResult) - Method in class services.publix.PublixUtils: Returns an Optional of the last ComponentResult of this studyResult but only if it's not 'done'.
retrieveCurrentComponentResult_returnsEmptyIfDone() - Method in class services.publix.PublixUtilsTest
retrieveCurrentComponentResult_returnsPresentIfNotDone() - Method in class services.publix.PublixUtilsTest
retrieveFirstActiveComponent(Study) - Method in class services.publix.PublixUtils: Returns the first component in the given study that is active.
retrieveFirstActiveComponent_returnsFirstActive() - Method in class services.publix.PublixUtilsTest
retrieveFirstActiveComponent_throwsWhenNoneActive() - Method in class services.publix.PublixUtilsTest
retrieveLastUploadedResultFile(StudyResult, Component, String) - Method in class services.publix.PublixUtils: Gets an uploaded result file with the given filename.
retrieveLastUploadedResultFile_returnsLastExisting() - Method in class services.publix.PublixUtilsTest
retrieveSignedinUser(Http.Request) - Method in class services.publix.PublixUtils: Retrieves the currently signed-in user or throws an ForbiddenPublixException if none is signed in.
retrieveSignedinUser_successAndFailures() - Method in class services.publix.PublixUtilsTest
retrieveStartedComponentResult(Component, StudyResult) - Method in class services.publix.PublixUtils: Gets the current ComponentResult from the storage or if it doesn't exist yet starts one for the given component.
retrieveStartedComponentResult_returnsExistingCurrent() - Method in class services.publix.PublixUtilsTest
retrieveStartedComponentResult_startsNewIfNone() - Method in class services.publix.PublixUtilsTest
retrieveStudyResultCountsPerWorker(Batch) - Method in class services.gui.WorkerService: Retrieves the count of StudyResults for each worker type in a map ( workerType -> count).
retrieveStudyResultCountsPerWorker_returnsCountsForAllTypes() - Method in class services.gui.WorkerServiceTest
retrieveUser(String) - Method in class services.gui.UserService: Retrieves the user with the given username from the DB.
retrieveUser_notFound_throws() - Method in class services.gui.UserServiceTest
retrieveUser_returnsUser() - Method in class services.gui.UserServiceTest
retrieveWorker(Long) - Method in class services.publix.PublixUtils: Retrieves the worker with the given worker ID from the DB.
returnsNullForNullInput() - Method in class models.common.UserTest
ROLE - Static variable in class models.gui.NewUserProperties
roles() - Method in annotation type auth.gui.AuthAction.Auth
roles() - Method in class models.common.ApiToken
run() - Method in class migrations.common.ComponentResultMigration
run() - Method in class migrations.common.StudyLinkMigration
run(Http.Request, String) - Method in class controllers.publix.PublixInterceptor
RUN_COMPONENT_FINISHED - controllers.publix.workers.JatosPublix.JatosRun
RUN_COMPONENT_START - controllers.publix.workers.JatosPublix.JatosRun
RUN_STUDY - controllers.publix.workers.JatosPublix.JatosRun
runComponent(Http.Request, Long, Long, Long, Long, Long, Long) - Method in class controllers.gui.Components: Runs a single component (in opposite to the whole study).
runStudy(Http.Request, Long, Long, Long, Long, Long) - Method in class controllers.gui.Studies: Runs the whole study.
runx(String, Long, Long, Long) - Method in class controllers.publix.PublixInterceptor: Facilitates multiple study runs in parallel each in its own iframe.

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