A B C D E F G H I J L M N O P R S T U V W Z

C

call(Http.Request) - Method in class auth.gui.AuthAction

call(Http.Context) - Method in class controllers.gui.actionannotations.ApiAccessLoggingAction

call(Http.Context) - Method in class controllers.gui.actionannotations.GuiAccessLoggingAction

call(Http.Context) - Method in class controllers.publix.actionannotation.PublixAccessLoggingAction

callback(Http.Request) - Method in class auth.gui.SignInOidc

Callback handed to the OIDC provider to be called after authentication

cancelUpdate() - Method in class controllers.gui.Updates

cancelUpdate() - Method in class general.common.JatosUpdater

changeActive(Component, boolean) - Method in class daos.common.ComponentDao

Change and persist active property of a Component.

changeAdminRole(String, Boolean) - Method in class services.gui.UserService

Adds or removes ADMIN role of the user with the given username and persists the change.

changeComponentOrder(Long, Long, String) - Method in class controllers.gui.Studies

POST request to change the oder of components within a study.

changeComponentPosition(String, Study, Component) - Method in class services.gui.StudyService

Changes the position of the given component within the given study to the new position given in newPosition.

changePasswordByAdmin(Http.Request) - Method in class controllers.gui.Users

Handles POST request from change password form in user manager initiated by an admin

changePasswordByUser(Http.Request) - Method in class controllers.gui.Users

Handles POST request from change password form by user themselves

ChangePasswordModel - Class in models.gui

Model used by the GUI to change a user password.

ChangePasswordModel() - Constructor for class models.gui.ChangePasswordModel

changeSuperuserRole(String, boolean) - Method in class services.gui.UserService

Adds or removes SUPERUSER role of the user with the given username and persists the change.

changeUserMember(Study, User, boolean) - Method in class services.gui.StudyService

Changes the member user in the study.

ChangeUserProfileModel - Class in models.gui

Model used by the GUI to change a user's profile.

ChangeUserProfileModel() - Constructor for class models.gui.ChangeUserProfileModel

checkComponentBelongsToStudy(Study, Component) - Method in class services.publix.PublixUtils

Checks if this component belongs to this study and throws an BadRequestPublixException if it doesn't.

checkComponentResult(T, User, boolean) - Method in class services.gui.Checker

Checks a ComponentResult whether the belonging Study and Component are fine (checkStandard).

checkComponentResults(List<ComponentResult>, User, boolean) - Method in class services.gui.Checker

Checks a list of ComponentResult.

checkDefaultBatch(Batch) - Method in class services.gui.Checker

Throws an ForbiddenException if this batch is the default batch of it's study.

Checker - Class in services.gui

Service class that provides checks for different entities

Checker() - Constructor for class services.gui.Checker

checkFileInStudyAssetsDirExists(String, String) - Method in class utils.common.IOUtils

checkFilename(String) - Static method in class utils.common.IOUtils

checkMaxTotalWorkers(Batch, Worker) - Method in class services.publix.StudyAuthorisation

Check if the max total worker number is reached for this batch.

checkStandardForBatch(Batch, Study, Long) - Method in class services.gui.Checker

Checks the batch and throws an Exception in case of a problem.

checkStandardForBatch(Batch, Long, User) - Method in class services.gui.Checker

checkStandardForComponent(Long, Long, Component) - Method in class services.gui.Checker

Checks the component of this study and throws an Exception in case of a problem.

checkStandardForComponent(Long, Component, User) - Method in class services.gui.Checker

checkStandardForGroup(GroupResult, Study, Long) - Method in class services.gui.Checker

Checks the group and throws an Exception in case of a problem.

checkStandardForGroup(GroupResult, Long, User) - Method in class services.gui.Checker

checkStandardForStudy(Study, Long, User) - Method in class services.gui.Checker

Checks the study and throws an Exception in case of a problem.

checkStudyAssetsDirExists(String) - Method in class utils.common.IOUtils

checkStudyIsGroupStudy(Study) - Method in class services.publix.PublixUtils

Throws ForbiddenPublixException if group doesn't allow messaging.

checkStudyLocked(Study) - Method in class services.gui.Checker

Throws an ForbiddenException if a study is locked.

checkStudyResult(StudyResult, User, boolean) - Method in class services.gui.Checker

Checks a StudyResult whether the belonging Study is fine, especially that the StudyResult belongs to this user.

checkStudyResults(List<StudyResult>, User, boolean) - Method in class services.gui.Checker

Checks a list of StudyResult.

checkWorker(Worker, Long) - Method in class services.gui.Checker

Throws a Exception in case the worker doesn't exist.

checkWorkerAllowedToDoStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.StudyAuthorisation

Checks whether the given worker is allowed to do this study in this batch.

checkWorkerAllowedToDoStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.GeneralMultipleStudyAuthorisation

checkWorkerAllowedToDoStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.GeneralSingleStudyAuthorisation

checkWorkerAllowedToDoStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.JatosStudyAuthorisation

checkWorkerAllowedToDoStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.MTStudyAuthorisation

checkWorkerAllowedToDoStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.PersonalMultipleStudyAuthorisation

checkWorkerAllowedToDoStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.PersonalSingleStudyAuthorisation

checkWorkerAllowedToStartStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.StudyAuthorisation

Checks whether the given worker is allowed to start this study in this batch.

checkWorkerAllowedToStartStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.GeneralMultipleStudyAuthorisation

checkWorkerAllowedToStartStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.GeneralSingleStudyAuthorisation

checkWorkerAllowedToStartStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.JatosStudyAuthorisation

checkWorkerAllowedToStartStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.MTStudyAuthorisation

checkWorkerAllowedToStartStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.PersonalMultipleStudyAuthorisation

checkWorkerAllowedToStartStudy(Http.Session, Worker, Study, Batch) - Method in class services.publix.workers.PersonalSingleStudyAuthorisation

cleanupAfterStudyImport() - Method in class services.gui.ImportExportService

clearSessionCookie(Http.Session) - Method in class auth.gui.AuthService

Deletes the session cookie.

clone(Batch) - Method in class services.gui.BatchService

Clones a Batch but does not persists.

clone(Component) - Method in class services.gui.ComponentService

Clones a Component entity.

clone(Study) - Method in class services.gui.StudyService

Clones the given Study.

cloneComponent(Long, Long) - Method in class controllers.gui.Components

GET request to clone a component.

cloneComponentHtmlFile(String, String) - Method in class utils.common.IOUtils

Copies a component's HTML file.

cloneStudy(Long) - Method in class controllers.gui.Studies

GET request to clones a study.

cloneStudyAssetsDirectory(String) - Method in class utils.common.IOUtils

Copies study assets' directory.

cloneWholeComponent(Component) - Method in class services.gui.ComponentService

Does the same as cloneComponent and additionally clones the HTML file and changes the title.

COMMENT - Static variable in class models.common.workers.PersonalMultipleWorker

COMMENT - Static variable in class models.common.workers.PersonalSingleWorker

COMMENT_TOO_LONG - Static variable in class general.common.MessagesStrings

COMMENTS - Static variable in class models.common.legacy.StudyV2

COMMENTS - Static variable in class models.gui.BatchProperties

COMMENTS - Static variable in class models.gui.ComponentProperties

COMMENTS - Static variable in class models.gui.StudyProperties

Common - Class in general.common

This class provides configuration that is common to all modules of JATOS.

CommonGuiceModule - Class in general.common

Configuration of Guice dependency injection for Publix module

CommonGuiceModule() - Constructor for class general.common.CommonGuiceModule

Component - Class in models.common

DB entity of a component.

Component() - Constructor for class models.common.Component

COMPONENT - Static variable in class models.common.Component

COMPONENT - Static variable in class models.gui.ComponentProperties

COMPONENT_DELETED_BUT_FILES_NOT - Static variable in class general.common.MessagesStrings

COMPONENT_ID - Static variable in class services.publix.idcookie.IdCookieModel

COMPONENT_INVALID - Static variable in class general.common.MessagesStrings

COMPONENT_POSITION - Static variable in class services.publix.idcookie.IdCookieModel

COMPONENT_RESULT_ID - Static variable in class services.publix.idcookie.IdCookieModel

COMPONENT_WASNT_SAVED - Static variable in class general.common.MessagesStrings

componentCloneHtmlNotCloned(String) - Static method in class general.common.MessagesStrings

ComponentDao - Class in daos.common

DAO for Component entity

componentDone(ComponentResult) - Static method in class services.publix.PublixHelpers

True if ComponentResult's state is in FINISHED or ABORTED or FAIL or RELOADED.

componentHasNoStudy(Long) - Static method in class general.common.MessagesStrings

componentNotActive(Long, Long) - Static method in class services.publix.PublixErrorMessages

componentNotAllowedToReload(Long, Long) - Static method in class services.publix.PublixErrorMessages

componentNotBelongToStudy(Long, Long) - Static method in class general.common.MessagesStrings

componentNotBelongToStudy(Long, Long) - Static method in class services.publix.PublixErrorMessages

componentNotExist(Long) - Static method in class general.common.MessagesStrings

componentNotExist(Long, Long) - Static method in class services.publix.PublixErrorMessages

ComponentProperties - Class in models.gui

Model of component properties for UI (not persisted in DB).

ComponentProperties() - Constructor for class models.gui.ComponentProperties

ComponentResult - Class in models.common

DB entity of a component result.

ComponentResult() - Constructor for class models.common.ComponentResult

ComponentResult(Component) - Constructor for class models.common.ComponentResult

ComponentResult.ComponentState - Enum in models.common

State of this component run (it actually should be called ComponentResultState)

componentResultAsJsonNode(ComponentResult) - Method in class utils.common.JsonUtils

Returns an ObjectNode of the given ComponentResult.

componentResultDao - Variable in class controllers.publix.Publix

ComponentResultDao - Class in daos.common

DAO for ComponentResult entity

componentResultDataShortForUI(ComponentResult) - Method in class utils.common.JsonUtils

Returns ComponentResult.dataShort limited to MAX_CHAR_PER_RESULT characters.

ComponentResultIdsExtractor - Class in services.gui

Extracts component result IDs from JSON or a Map.

componentResultMetadata(ComponentResult) - Method in class utils.common.JsonUtils

ComponentResultMigration - Class in utils.common

Migrates the database for all <3.7.5.

componentResultNotExist(Long) - Static method in class general.common.MessagesStrings

ComponentResults - Class in controllers.gui

Controller that deals with requests regarding ComponentResult.

componentResults(Long, Long) - Method in class controllers.gui.ComponentResults

Shows a view with all component results of a component of a study.

Components - Class in controllers.gui

Controller that deals with all requests regarding Components within the JATOS GUI.

ComponentService - Class in services.gui

Service class for JATOS Controllers (not Publix).

ComponentUploadUnmarshaller - Class in services.gui

Unmarshalling of an JSON string to a componet.

concreteUnmarshaling(String) - Method in class services.gui.ComponentUploadUnmarshaller

Accepts an JSON String and turns the data object within this JSON String into an object of type Component.

concreteUnmarshaling(String) - Method in class services.gui.StudyUploadUnmarshaller

Accepts an JSON String and turns the data object within this JSON String into an object of type Study.

concreteUnmarshaling(String) - Method in class services.gui.UploadUnmarshaller

Accepts an JSON String and turns the data object within this JSON String into an object of the type T.

configure() - Method in class general.common.CommonGuiceModule

configure() - Method in class general.publix.PublixGuiceModule

controllers.gui - package controllers.gui

controllers.gui.actionannotations - package controllers.gui.actionannotations

controllers.publix - package controllers.publix

controllers.publix.actionannotation - package controllers.publix.actionannotation

controllers.publix.workers - package controllers.publix.workers

COOKIE_AND - Static variable in class services.publix.idcookie.IdCookieSerialiser

COOKIE_EQUALS - Static variable in class services.publix.idcookie.IdCookieSerialiser

COOKIE_NAME - Static variable in class services.publix.workers.GeneralSingleCookieService

COULDNT_CHANGE_POSITION_OF_COMPONENT - Static variable in class general.common.MessagesStrings

COULDNT_OPEN_LOG - Static variable in class general.common.MessagesStrings

COULDNT_READ_FILE - Static variable in class general.common.MessagesStrings

COULDNT_READ_JSON - Static variable in class general.common.MessagesStrings

couldntExtractFromIdCookie(String, String) - Static method in class services.publix.PublixErrorMessages

couldntExtractIndexFromIdCookieName(String) - Static method in class services.publix.PublixErrorMessages

couldntGeneratePathToFileOrDir(String) - Static method in class general.common.MessagesStrings

count() - Method in class daos.common.ComponentResultDao

count() - Method in class daos.common.StudyDao

Returns the number of Study rows

count() - Method in class daos.common.StudyResultDao

Returns the number of StudyResult rows

count() - Method in class daos.common.UserDao

Returns the number of User rows

count() - Method in class daos.common.worker.WorkerDao

Returns the number of Worker rows

countAll() - Method in class daos.common.StudyLinkDao

countByBatch(Batch) - Method in class daos.common.GroupResultDao

countByBatch(Batch, String) - Method in class daos.common.StudyResultDao

Returns the number of StudyResults belonging to the given batch but excludes results from the given workerTypeToBeExcluded.

countByBatchAndWorkerType(Batch, String) - Method in class daos.common.StudyLinkDao

countByBatchAndWorkerType(Batch, String) - Method in class daos.common.StudyResultDao

Returns the number of StudyResults belonging to the given batch and given worker type.

countByComponent(Component) - Method in class daos.common.ComponentResultDao

Returns the number of ComponentResults belonging to the given Component.

countByGroup(GroupResult) - Method in class daos.common.StudyResultDao

Returns the number of StudyResults belonging to the given group.

countByStudy(Study) - Method in class daos.common.StudyResultDao

Returns the number of StudyResults belonging to the given study.

countByWorker(Worker, User) - Method in class daos.common.StudyResultDao

Returns the number of StudyResults belonging to the given worker.

countComponentResultsForStudyResultIds(List<Long>) - Method in class daos.common.StudyResultDao

countTotal() - Method in class daos.common.StudyDao

Returns the total number of Studys (including the deleted ones)

countTotal() - Method in class daos.common.StudyResultDao

Returns the total number of StudyResults (including the deleted ones)

countTotal() - Method in class daos.common.worker.WorkerDao

Returns the total number of Worker (including the deleted ones)

create(Http.Request) - Method in class controllers.gui.Users

Handles POST request of user create form.

create(ApiToken) - Method in class daos.common.ApiTokenDao

create(Batch) - Method in class daos.common.BatchDao

create(Component) - Method in class daos.common.ComponentDao

create(ComponentResult) - Method in class daos.common.ComponentResultDao

create(GroupResult) - Method in class daos.common.GroupResultDao

create(Study) - Method in class daos.common.StudyDao

create(StudyLink) - Method in class daos.common.StudyLinkDao

create(StudyResult) - Method in class daos.common.StudyResultDao

create(User) - Method in class daos.common.UserDao

Persist user (involves creating a JatosWorker)

create(String, boolean) - Method in class daos.common.worker.MTWorkerDao

Create MTWorker.

create(Worker) - Method in class daos.common.worker.WorkerDao

create(Study) - Method in class general.common.StudyLogger

create(User, String, Integer) - Method in class services.gui.ApiTokenService

Generates a new api token and persists it in the database.

createAdminIfNotExists() - Method in class services.gui.UserService

Check for user admin: In case the application is started the first time we need an initial user: admin.

createAndPersistBatch(Batch, Study, User) - Method in class services.gui.BatchService

Creates batch, initialises it and persists it.

createAndPersistComponent(Study, Component) - Method in class services.gui.ComponentService

Initialise and persist the given Component.

createAndPersistComponent(Study, ComponentProperties) - Method in class services.gui.ComponentService

Create and persist a Component with given properties.

createAndPersistGeneralMultipleWorker(Batch) - Method in class services.publix.WorkerCreator

Create and persist a GeneralMultipleWorker

createAndPersistGeneralSingleWorker(Batch) - Method in class services.publix.WorkerCreator

Create and persist a GeneralSingleWorker

createAndPersistMTWorker(String, boolean, Batch) - Method in class services.publix.WorkerCreator

Creates and persists a MTWorker or a MTSandboxWorker.

createAndPersistStudy(User, StudyProperties) - Method in class services.gui.StudyService

Create and persist a Study with given properties.

createAndPersistStudy(User, Study) - Method in class services.gui.StudyService

Persists the given Study.

createAndPersistStudyLinks(String, int, Batch, String) - Method in class services.gui.StudyLinkService

createAndPersistUser(User, String, boolean, User.AuthMethod) - Method in class services.gui.UserService

Creates a user, sets password hash and persists them.

createComponentResult(StudyResult, Component) - Method in class services.publix.ResultCreator

createDefaultBatch(Study) - Method in class services.gui.BatchService

Create and initialises default Batch.

createDir(File) - Static method in class utils.common.IOUtils

Creates the given File as a directory, including necessary and non-existent parent directories.

createStudyAssetsDir(String) - Method in class utils.common.IOUtils

Creates a study assets dir.

createStudyExportZipFile(Study) - Method in class services.gui.ImportExportService

Returns a JATOS study archive (suffix .jzip).

createStudyLinksForExistingPersonalWorkers() - Method in class services.gui.StudyLinkService

This method is only used during update from version <3.7.1.

createStudyResult(StudyLink, Worker) - Method in class services.publix.ResultCreator

Creates StudyResult and adds it to the given Worker.

CREATION_TIME - Static variable in class services.publix.idcookie.IdCookieModel

A B C D E F G H I J L M N O P R S T U V W Z